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The LD plots are generated automatically by the InnateImmunity pipeline using software written by Ross Lazarus.

The raw data is partitioned by population. Each diagram shows the offsets of the SNPs within the gene across the top and down the right-hand side of the diagram. The intersection of each row and column shows a color reprensentation of the linkage disequilibrium between the two SNPs. Darker colors representing higher values.

Default minraf is 10%.