Pharmacogenetics of Asthma Treatment

User: Anonymous User ( Login | Register )

PyBEST HTSNP Web interface

Introduction

This program will run the BEST algorithm to find sets of HTSNP which can unambiguously resolve every one of the haplotypes using only the HTSNP.
Several important things to note:

All care, no responsibility. This software is made available without any kind of guarantee of fitness for any purpose whatsoever. It may NOT work correctly. If you miss the Nobel prize because of my mistake, tough. On the other hand, if you win one, an acknowledgement during your acceptance speech would be appreciated. If you detect reproducible errors, please let our know urgently.

Example

I. Genename

The gene name can automatically be included in the plot title, and is also used to label the optional SNP Map which is drawn along the diagonal of the LD Plot. You can change the gene name in the gray box below to anything you like:

III. Haplotypes

Input is the set of aplotypes to be analysed - one per line with no spaces between columns OR cut and paste the first block of haplotypes section from a Phase output file ( Help on acceptable input formats ). Examp

Show all alleles in output?

The default behavior is use the sparse notation to indicate hapltoypes in the style of Johnson, et.al. (link???). This format uses a "." to indicate the common allele at a given locus. You can alternately indicate that you would like to include the actual allele instead of the "." for the common allele.