Pharmacogenetics of Asthma Treatment

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Haplotype-Tagging SNP Analyzer

Introduction

When you click "Do it!", the program will test to see if it is possible to unambiguously resolve every one of the haplotypes using only the HTSNP. If this is not possible, you will be shown which haplotypes will be unresolvable
Several important things to note:

All care, no responsibility. This software is made available without any kind of guarantee of fitness for any purpose whatsoever. It may NOT work correctly. If you miss the Nobel prize because of my mistake, tough. On the other hand, if you win one, an acknowledgement during your acceptance speech would be appreciated. If you detect reproducible errors, please let know urgently.

Example

I. Genename

The gene name can automatically be included in the plot title, and is also used to label the optional SNP Map which is drawn along the diagonal of the LD Plot. You can change the gene name in the gray box below to anything you like:

III. Haplotypes

Input is a set of haplotypes, one per line, as follows:

II. Indicate which SNPs are htSNPs

This field is a comma seperated list of indices (starting at 1) of which SNPs in the haplotypes above will be considered "haplotype-tagging". This information can be deduced using other tools, such as the BEST htSNP Tool.: