 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
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| Prettybase importer |
|
| Gene: |
CFLAR |
Region searched: |
chr2:202,173,433-202,241,544 |
| Match orientation: |
Forward |
Processing time: |
1.05 seconds |
| Total SNPs: |
11 |
Correct: |
11 |
|
|
| Imported SNPs |
|
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 447 |
chr2:202200248 |
3116 C/T |
|
T (57) |
C (1) |
|
|
2% |
T |
T |
|
IIPGA-CFLAR-447 |
| 663 |
chr2:202200464 |
3332 C/G |
|
G (45) |
C (1) |
|
|
2% |
G |
G |
|
IIPGA-CFLAR-663 |
| 703 |
chr2:202200504 |
3372 A/G |
|
G (41) |
A (1) |
|
|
2% |
G |
G |
|
IIPGA-CFLAR-703 |
| 7913 |
chr2:202207714 |
10582 C/G |
|
G (53) |
C (1) |
|
|
2% |
G |
G |
|
IIPGA-CFLAR-7913 |
| 16377 |
chr2:202216178 |
19046 A/G |
|
A (53) |
G (1) |
|
|
2% |
A |
A |
|
IIPGA-CFLAR-16377 |
| 16698 |
chr2:202216499 |
19367 C/T |
|
T (43) |
C (9) |
|
|
17% |
T |
T |
|
IIPGA-CFLAR-16698 |
| 16980 |
chr2:202216781 |
19649 C/G |
|
G (42) |
C (10) |
|
|
17% |
G |
G |
|
IIPGA-CFLAR-16980 |
| 27873 |
chr2:202227674 |
30542 A/G |
|
A (56) |
G (6) |
|
|
10% |
G |
G |
rs2518142 |
IIPGA-CFLAR-27873 |
| 28230 |
chr2:202228031 |
30899 A/T |
376 D/V |
A (59) |
T (1) |
|
|
2% |
A |
A |
|
IIPGA-CFLAR-28230 |
| 28363 |
chr2:202228164 |
31032 A/G |
420 P/P |
A (35) |
G (25) |
|
|
40% |
A |
A |
rs1594 |
IIPGA-CFLAR-28363 |
| 30684 |
chr2:202230485 |
33353 C/T |
|
T (53) |
C (3) |
|
|
5% |
T |
T |
|
IIPGA-CFLAR-30684 |
|
|
|
| © 2001-2004, Alberto Riva, CHIP |