 |
SNPper - IIPGA PrettyBase Importer |
Goldenpath: hg16
dbSNP: build 118
Login: pgabot |
 |
|
|
| |
| Prettybase importer |
|
| Gene: |
GNB3 |
Region searched: |
chr12:6,809,636-6,836,818 |
| Match orientation: |
Forward |
Processing time: |
0.67 seconds |
| Total SNPs: |
13 |
Correct: |
3 |
|
|
| Imported SNPs |
|
Position in
refseq |
Absolute
position |
Relative
positions |
AA
change |
All 1 |
All 2 |
All 3 |
All 4 |
Minor allele
frequency |
Base in
refseq |
Known base
(from GoldenPath) |
Known SNP
(from dbSNP) |
Assigned name |
| 1167 |
chr12:6821379 |
666 C/T |
|
C (32) |
T (2) |
|
|
6% |
T |
T |
|
IIPGA-GNB3-1167 |
| 1159 |
[not matched: out of sequence] |
IIPGA-GNB3-1159 |
| 4924 |
chr12:6825136 |
4423 C/T |
275 S/S |
T (33) |
C (31) |
|
|
48% |
C |
C |
rs6489738 |
IIPGA-GNB3-4924 |
| 452 |
[not matched: out of sequence] |
IIPGA-GNB3-452 |
| 646 |
[not matched: out of sequence] |
IIPGA-GNB3-646 |
| 2969 |
[not matched: out of sequence] |
IIPGA-GNB3-2969 |
| 4913 |
[not matched: out of sequence] |
IIPGA-GNB3-4913 |
| 2753 |
[not matched: out of sequence] |
IIPGA-GNB3-2753 |
| 4937 |
chr12:6825149 |
4436 C/T |
280 L/F |
C (63) |
T (1) |
|
|
2% |
C |
C |
|
IIPGA-GNB3-4937 |
| 1376 |
[not matched: out of sequence] |
IIPGA-GNB3-1376 |
| 3149 |
[not matched: out of sequence] |
IIPGA-GNB3-3149 |
| 4861 |
[not matched: out of sequence] |
IIPGA-GNB3-4861 |
| 523 |
[not matched: out of sequence] |
IIPGA-GNB3-523 |
|
|
|
| © 2001-2004, Alberto Riva, CHIP |